COMPLETE PUBLICATIONS LIST

Solomon B, Helfrich B, Zeng C, Chansky K, Nakajima E, Gazdar AF, Gandara D, Franklin WA, Hirsch FR, Duncan MW, Bunn Jr. PA, Hunsucker SW. Identification of putative biomarkers of gefitinib sensitivity in non-small cell lung cancer using difference gel electrophoresis (DIGE). J. Nat. Cancer Inst:: Submitted for publication

Kumar G, Smith QR, Hokari M, Parepally J, Duncan MW. Brain uptake, pharmacokinetics and tissue distribution in the rat of neurotoxic N-butylbenzenesulfonamide. Toxicological Sciences:: Accepted for publication

Taguchi, F, Solomon B, Gregorc V, Kasahara K, Nishio M, Brahmer J, Massion PP, Schiller J, Ludovini V, Spreafico A, Gray R, Roder H, Grigorieva J, Tsypin M, Hunsucker SW, Caprioli R, Duncan MW, Hirsch FR, Bunn Jr. PA, Carbone DP. Mass Spectrometry to Predict Clinical Outcome for NSCLC Patients Treated with EGFR TKIs: A Cross Institutional Study. J. Nat. Cancer Inst:: Accepted for publication

M Duncan, MW. Proteomics and its Fifteen Minutes. (Editorial) Experimental Biology & Medicine 2007:: In Press

Dermott, RA, Porterfield, HS, Mezayen, RE, Schlichting, DG, Hansen, K.C, Duncan, MW, Solomon, B., Redzic, J., Harbeck, R., 1, Dreskin, S.C. Successful Removal of Ara h 2 from a Crude Peanut Extract Yields Minimal Change in Allergenic Activity. J. Allergy & Clinical Immunology :: In Press Chace DH, Barr JR, Duncan MW, Matern D, Morris MR, Palmer-Toy DE, Rockwood AL, Suizdak G, Urbani A, Yergey AL, Chan YM. Mass Spectrometry in the Clinical Laboratory: General Principles and Guidance; Proposed Guideline. Clinical and Laboratory Standards Institute. 2007:27(3).

Hunsucker SW, Accurso FJ, Duncan MW. Proteomics in Pediatric Research and Practice. Adv. Peds. 2007. Duncan MW, Hunsucker SW. Comments on standards in proteomics and the concept of fitness-for-purpose. Proteomics. 2006:: In Press

Helmke SM, Duncan MW. An analytic appraisal of mass spectrometric approaches to nitrate and nitrite determination and their impact in biomedical research. J Chromatog. B. (peer reviewed, invited review) 2006:: In Press

Duncan MW, Solomon B. Proteomics of Seminal Fluid In øProteomics of Human Body Fluids: Principles, Methods and ApplicationsÓ Ed. Visith Thongboonkerd, Humana Press 2006:: In Press

Brown LM, Helmke SM, Hunsucker SW, Netea-Maier RT, Chiang SA, Heinz DE, Shroyer KR, Duncan MW, Haugen BR. Quantitative and Qualitative Differences in Protein Expression Between Papillary Thyroid Carcinoma and Normal Thyroid Tissue. Mol Carcinogen 2006:45(8);613-26.

Hunsucker SW, Duncan MW. Is protein overlap in two-dimensional gels a serious practical problem? Proteomics. 2006:6(5);1374-5.

Blake CA, Helmke SM. Proteomics of the Anterior Pituitary Gland as a Model for Studying the Physiology of a Heterogeneous Organ. Exp Biol Med 2005:230(11):793-9

Duncan MW, Hunsucker SW. Proteomics as a tool for clinically relevant biomarker discovery and validation. Exp Biol Med (Maywood). 2005:230(11):808-17

Blake CA, Brown LM, Duncan MW, Hunsucker SW, Helmke SM. Estrogen regulation of the rat anterior pituitary gland proteome. Exp Biol Med (Maywood). 2005:230(11):800-7

Yen CY, Helmke SM, Cios KJ, Perryman MB, Duncan MW. Quantitative analysis of proteomics using data mining. An automated system for constructing assays quickly and precisely. IEEE Eng Med Biol Mag. 2005:24(3):67-72

Duncan MW, Gale PJ, Yergey AL. Quantification. In The Encyclopedia of Mass Spectrometry. Vol. 3. Biological Applications. Part B. Elsevier. Eds. R. Caprioli & M. Gross. 2005:: In press

Bowler RP, Duda B, Chan ED, Enghild JJ, Ware LB, Matthay MA, Duncan MW. Proteomic analysis of pulmonary edema fluid and plasma in patients with acute lung injury. Am J Physiol Lung Cell Mol Physiol. 2004:286(6):L1095-104 Helmke SM, Yen CY, Cios KJ, Nunley K, Bristow MR, Duncan MW, Perryman MB. Simultaneous quantification of human cardiac alpha- and beta-myosin heavy chain proteins by MALDI-TOF mass spectrometry. Anal Chem. 2004:76(6):1683-9

Hunsucker SW, Klage K, Slaughter SM, Potts M, Helm RF. A preliminary investigation of the Nostoc punctiforme proteome. Biochem Biophys Res Commun. 2004:317(4):1121-7

Sucharov CC, Helmke SM, Langer SJ, Perryman MB, Bristow M, Leinwand L. The Ku protein complex interacts with YY1, is up-regulated in human heart failure, and represses alpha myosin heavy-chain gene expression. Mol Cell Biol. 2004:24(19):8705-15

Hammack BN, Fung KY, Hunsucker SW, Duncan MW, Burgoon MP, Owens GP, Gilden DH. Proteomic analysis of multiple sclerosis cerebrospinal fluid. Mult Scler. 2004:10(3):245-60

Fung KY, Glode LM, Green S, Duncan MW. A comprehensive characterization of the peptide and protein constituents of human seminal fluid. Prostate. 2004:61(2):171-81

Fung KY, Askovic S, Basile F, Duncan MW. A simple and inexpensive approach to interfacing high-performance liquid chromatography and matrix-assisted laser desorption/ionization-time of flight-mass spectrometry. Proteomics. 2004:4(10):3121-7

Fung KY, Morris C, Sathe S, Sack R, Duncan MW. Characterization of the in vivo forms of lacrimal-specific proline-rich proteins in human tear fluid. Proteomics. 2004:4(12):3953-9

Duncan MW. A review of approaches to the analysis of 3-nitrotyrosine. Amino Acids. 2003:25(3-4):351-61

Gustafson DL, Long ME, Zirrolli JA, Duncan MW, Holden SN, Pierson AS, Eckhardt SG. Analysis of docetaxel pharmacokinetics in humans with the inclusion of later sampling time-points afforded by the use of a sensitive tandem LCMS assay. Cancer Chemother Pharmacol. 2003:52(2):159-66

Peebles KA, Duncan MW, Ruch RJ, Malkinson AM. Proteomic analysis of a neoplastic mouse lung epithelial cell line whose tumorigenicity has been abrogated by transfection with the gap junction structural gene for connexin 43, Gja1. Carcinogenesis. 2003:24(4):651-7 Bohlmeyer TJ, Helmke S, Ge S, Lynch J, Brodsky G, Sederberg JH, Robertson AD, Minobe W, Bristow MR, Perryman MB. Hypoplastic left heart syndrome myocytes are differentiated but possess a unique phenotype. Cardiovasc Pathol. 2003:12(1):23-31

Krenz M, Sanbe A, Bouyer-Dalloz F, Gulick J, Klevitsky R, Hewett TE, Osinska HE, Lorenz JN, Brosseau C, Federico A, Alpert NR, Warshaw DM, Perryman MB, Helmke SM, Robbins J. Analysis of myosin heavy chain functionality in the heart. J Biol Chem. 2003:278(19):17466-74

Nicolls MR, D'Antonio JM, Hutton JC, Gill RG, Czwornog JL, Duncan MW. Proteomics as a tool for discovery: proteins implicated in Alzheimer's disease are highly expressed in normal pancreatic islets. J Proteome Res. 2003:2(2):199-205

Poljak A, Dawes IW, Ingelse BA, Duncan MW, Smythe GA, Grant CM. Oxidative damage to proteins in yeast cells exposed to adaptive levels of H(2)O(2). Redox Rep. 2003:8(6):71-7

Fessler MB, Malcolm KC, Duncan MW, Worthen GS. Lipopolysaccharide stimulation of the human neutrophil: an analysis of changes in gene transcription and protein expression by oligonucleotide microarrays and proteomics. Chest. 2002:121(3 Suppl):75S-76S

Naranda T, Kaufman RI, Li J, Wong K, Boge A, Hallen D, Fung KY, Duncan MW, Andersen N, Goldstein A, Olsson L. Activation of erythropoietin receptor through a novel extracellular binding site. Endocrinology. 2002:143(6):2293-302

Bucknall M, Fung KY, Duncan MW. Practical quantitative biomedical applications of MALDI-TOF mass spectrometry. J Am Soc Mass Spectrom. 2002:13(9):1015-27

Fessler MB, Malcolm KC, Duncan MW, Worthen GS. A genomic and proteomic analysis of activation of the human neutrophil by lipopolysaccharide and its mediation by p38 mitogen-activated protein kinase. J Biol Chem. 2002:277(35):31291-302

Wolthers T, Hoffman DM, Nugent AG, Duncan MW, Umpleby M, Ho KK. Oral estrogen antagonizes the metabolic actions of growth hormone in growth hormone-deficient women. Am J Physiol Endocrinol Metab. 2001:281(6):E1191-6

Hunsucker SW, Tissue BM, Potts M, Helm RF. Screening protocol for the ultraviolet-photoprotective pigment scytonemin. Anal Biochem. 2001:288(2):227-30

Zoellner H, Hou JY, Hochgrebe T, Poljak A, Duncan MW, Golding J, Henderson T, Lynch G. Fluorometric and mass spectrometric analysis of nonenzymatic glycosylated albumin. Biochem Biophys Res Commun. 2001:284(1):83-9

Winski SL, Faig M, Bianchet MA, Siegel D, Swann E, Fung K, Duncan MW, Moody CJ, Amzel LM, Ross D. Characterization of a mechanism-based inhibitor of NAD(P)H:quinone oxidoreductase 1 by biochemical, X-ray crystallographic, and mass spectrometric approaches. Biochemistry. 2001:40(50):15135-42

Dehn DL, Claffey DJ, Duncan MW, Ruth JA. Nicotine and cotinine adducts of a melanin intermediate demonstrated by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry. Chem Res Toxicol. 2001:14(3):275-9

Davies SM, Poljak A, Duncan MW, Smythe GA, Murphy MP. Measurements of protein carbonyls, ortho- and meta-tyrosine and oxidative phosphorylation complex activity in mitochondria from young and old rats. Free Radic Biol Med. 2001:31(2):181-90 Erratum in: Free Radic Biol Med 2001 Aug 15;31(4):559.

Hunsucker SW, Watson RC, Tissue BM. Characterization of inorganic coordination complexes by matrix-assisted laser desorption/ionization mass spectrometry. Rapid Commun Mass Spectrom. 2001:15(15):1334-40

Bush EW, Helmke SM, Birnbaum RA, Perryman MB. Myotonic dystrophy protein kinase domains mediate localization, oligomerization, novel catalytic activity, and autoinhibition. Biochemistry. 2000:39(29):8480-90

Yi D, Ingelse BA, Duncan MW, Smythe GA. Quantification of 3-nitrotyrosine in biological tissues and fluids: generating valid results by eliminating artifactual formation. J Am Soc Mass Spectrom. 2000:11(6):578-86

Mounsey JP, John JE 3rd, Helmke SM, Bush EW, Gilbert J, Roses AD, Perryman MB, Jones LR, Moorman JR. Phospholemman is a substrate for myotonic dystrophy protein kinase. J Biol Chem. 2000:275(30):23362-7

Poljak A, Pamphlett R, Gurney ME, Duncan MW. Measurement of o- and m-tyrosine as markers of oxidative damage in motor neuron disease. Redox Rep. 2000:5(2-3):137-40 Charlton TS, Ingelse BA, Black DS, Craig DC, Mason KE, Duncan MW. A covalent thymine-tyrosine adduct involved in DNA-protein crosslinks: synthesis, characterization, and quantification. Free Radic Biol Med. 1999:27(3-4):254-61

Smythe GA, Matanovic G, Yi D, Duncan MW. Trifluoroacetic anhydride-catalyzed nitration of toluene as an approach to the specific analysis of nitrate by gas chromatography-mass spectrometry. Nitric Oxide. 1999:3(1):67-74

Helmke S, Lohse K, Mikule K, Wood MR, Pfenninger KH. SRC binding to the cytoskeleton, triggered by growth cone attachment to laminin, is protein tyrosine phosphatase-dependent. J Cell Sci. 1998:111 ( Pt 16):2465-75

Blount BC, Duncan MW. Trace quantification of the oxidative damage products, meta- and ortho-tyrosine, in biological samples by gas chromatography-electron capture negative ionization mass spectrometry. Anal Biochem. 1997:244(2):270-6

Yi D, Smythe GA, Blount BC, Duncan MW. Peroxynitrite-mediated nitration of peptides: characterization of the products by electrospray and combined gas chromatography-mass spectrometry. Arch Biochem Biophys. 1997:344(2):253-9

Smythe GA, Duncan MW. Immunoassay of catecholamines and metabolites. Clin Chem. 1997:43(10):2011-2

Cordwell SJ, Wasinger VC, Cerpa-Poljak A, Duncan MW, Humphery-Smith I. Conserved motifs as the basis for recognition of homologous proteins across species boundaries using peptide-mass fingerprinting. J Mass Spectrom. 1997:32(4):370-8

Cerpa-Poljak A, Lahnstein J, Mason KE, Smythe GA, Duncan MW. Mass spectrometric identification and quantification of hemorphins extracted from human adrenal and pheochromocytoma tissue. J Neurochem. 1997:68(4):1712-9

Christen S, Woodall AA, Shigenaga MK, Southwell-Keely PT, Duncan MW, Ames BN. gamma-tocopherol traps mutagenic electrophiles such as NO(X) and complements alpha-tocopherol: physiological implications. Proc Natl Acad Sci U S A. 1997:94(7):3217-22

Lohse K, Helmke SM, Wood MR, Quiroga S, de la Houssaye BA, Miller VE, Negre-Aminou P, Pfenninger KH. Axonal origin and purity of growth cones isolated from fetal rat brain. Brain Res Dev Brain Res. 1996:96(1-2):83-96

Helmke S, Pfenninger KH. Growth cone enrichment and cytoskeletal association of non-receptor tyrosine kinases. Cell Motil Cytoskeleton. 1995:30(3):194-207

Wasinger VC, Cordwell SJ, Cerpa-Poljak A, Yan JX, Gooley AA, Wilkins MR, Duncan MW, Harris R, Williams KL, Humphery-Smith I. Progress with gene-product mapping of the Mollicutes: Mycoplasma genitalium. Electrophoresis. 1995:16(7):1090-4

Domigan NM, Charlton TS, Duncan MW, Winterbourn CC, Kettle AJ. Chlorination of tyrosyl residues in peptides by myeloperoxidase and human neutrophils. J Biol Chem. 1995:270(28):16542-8